Publication
Title
Seeing through the window: pre-fetching strategies for out-of-core image processing algorithms
Author
Abstract
Scientific data files have been increasing in size during the past decades. In the medical field, for instance. magnetic resonance imaging and computer aided tomography can yield image volumes of several gigabytes. While secondary storage (hard disks) increases in capacity and its cost per megabyte slumps over the years, primary memory (RAM) can still be a bottleneck in the processing of huge amounts of data. This represents a problem for image processing algorithms, which often need to keep in memory the original image and a copy of it to store the results. Operating systems optimize memory usage with memory paging and enhanced I/O operations. Although image processing algorithms usually work on neighbouring areas of a pixel, they follow pre-determined paths through the image and might not benefit from the memory paging strategies offered by the operating system, which are general purpose and unidimensional. Having the principles of locality and predetermined traversal paths in mind, we developed an algorithm that uses multi-threaded pre-fetching of data to build a disk cache in memory. Using the concept of a window that slides over the data, we predict the next block of memory to be read according to the path followed by the algorithm and asynchronously pre-fetch such block before it is actually requested. While other out-of-core techniques reorganize the original file in order to optimize reading, we work directly on the original file. We demonstrate our approach in different applications, each with its own traversal strategy and sliding window structure.
Language
English
Source (book)
Proceedings of SPIE Medical Imaging, San Diego, Calif., USA
Publication
San Diego, Calif. : SPIE, 2008
ISBN
978-0-8194-7103-1
Volume/pages
6919(2008), p. 9190
Article Reference
69190D
ISI
000256422200011
Medium
E-only publicatie
Full text (Publishers DOI)
UAntwerpen
Faculty/Department
Research group
Publication type
Subject
Affiliation
Publications with a UAntwerp address
External links
Web of Science
Record
Identification
Creation 08.10.2008
Last edited 05.05.2017
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